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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41778

Soil surface elevation dynamics in a mangrove-to-marsh ecotone characterized by vegetation shifts

Mangrove forest encroachment into coastal marsh habitats has been described in subtropical regions worldwide in recent decades. To better understand how soil processes may influence vegetation change, we studied soil surface elevation change, accretion rates, and soil subsurface change across a coastal salinity gradient in Florida, USA, an area with documented mangrove encroachment into saline mar
Authors
Rebecca J. Howard, Andrew From, Ken W. Krauss, Kimberly D. Andres, Nicole Cormier, Larry K. Allain, Michael Savarese

Pulsed flow-through auto-feeding beaker systems for the laboratory culture of juvenile freshwater mussels

Newly metamorphosed freshwater mussels are small and delicate, so that captive laboratory culture presents challenges for handling; for maintenance of suitable microhabitat, water quality, and food; and for avoidance of competitors and predators. To address these challenges, a new pulsed flow-through auto-feeding beaker system was developed for culturing juvenile mussels. In this system, groups of
Authors
James L. Kunz, Eric Brunson, M. Christopher Barnhart, Elizabeth A. Glidewell, Ning Wang, Christopher G. Ingersoll

A round-robin evaluation of the repeatability and reproducibility of environmental DNA assays for dreissenid mussels

Resource managers may be hesitant to make decisions based on environmental (e)DNA results alone since eDNA is an indirect method of species detection. One way to reduce the uncertainty of eDNA is to identify laboratory‐based protocols that ensure repeatable and reproducible results. We conducted a double‐blind round‐robin analysis of probe‐based assays for DNA of dreissenid (Dreissena spp.) mussel
Authors
Adam J. Sepulveda, Patrick R. Hutchins, Craig Jackson, Carl Ostberg, Matthew Laramie, Jon Amberg, Timothy D. Counihan, Andrew B. Hoegh, David Pilliod

Mercury and selenium concentrations in fishes of the Upper Colorado River Basin, southwestern United States: A retrospective assessment

Mercury (Hg) and selenium (Se) are contaminants of concern for fish in the Upper Colorado River Basin (UCRB). We explored Hg and Se in fish tissues (2,324 individuals) collected over 50 years (1962–2011) from the UCRB. Samples include native and non-native fish collected from lotic waterbodies spanning 7 major tributaries to the Colorado River. There was little variation of total mercury (THg) in
Authors
Natalie K. Day, Travis Schmidt, James Roberts, Barbara C. Osmundson, James Willacker, Collin Eagles-Smith

Heterogeneity in migration strategies of the whooping crane

Migratory birds use numerous strategies to successfully complete twice-annual movements between breeding and wintering sites. Context for conservation and management can be provided by characterizing these strategies. Variations in strategy among and within individuals support population persistence in response to changes in land use and climate. We used location data from 58 marked Whooping Crane
Authors
Aaron T. Pearse, Kristine L. Metzger, David A. Brandt, Mark T. Bidwell, Mary J. Harner, David M. Baasch, Wade C. Harrell

Demography of snowshoe hare population cycles

Cyclic fluctuations in abundance exhibited by some mammalian populations in northern habitats (“population cycles”) are key processes in the functioning of many boreal and tundra ecosystems. Understanding population cycles, essentially demographic processes, necessitates discerning the demographic mechanisms that underlie numerical changes. Using mark–recapture data spanning five population cycles
Authors
Madan K. Oli, Charles J Krebs, Alice J Kenney, Rudy Boonstra, Stan Boutin, James E. Hines

Phosphorus, nitrogen and dissolved organic carbon fluxes from sediments in freshwater rivermouths entering Green Bay (Lake Michigan; USA)

Transitional areas between ecosystem types are often active biogeochemically due to resource limitation changes. Lotic-to-lentic transitions in freshwaters appear active biogeochemically, but few studies have directly measured nutrient processing rates to assess whether processing within the rivermouth is important for load estimates or the local communities. We measured oxic fluxes of inorganic n
Authors
James H. Larson, William F. James, Faith A. Fitzpatrick, Paul C. Frost, Mary Anne Evans, Paul C. Reneau, Marguerite A. Xenopoulos

Calcite precipitation in Lake Powell reduces alkalinity and total salt loading to the Lower Colorado River Basin

Reservoirs can retain and transform carbon, nitrogen, phosphorus, and silica, but less is known about their effects on other biogeochemically relevant solutes. The salinization of freshwater ecosystems is a growing concern in many regions, and the role of reservoirs in salinity transport is an important research frontier. Here, we examine how a large desert southwest reservoir, Lake Powell, has al
Authors
Bridget Deemer, Edward G. Stets, Charles B. Yackulic

Frequent burning causes large losses of carbon from deep soil layers in a temperate savanna

Fire activity is changing dramatically across the globe, with uncertain effects on ecosystem processes, especially below‐ground. Fire‐driven losses of soil carbon (C) are often assumed to occur primarily in the upper soil layers because the repeated combustion of above‐ground biomass limits organic matter inputs into surface soil. However, C losses from deeper soil may occur if frequent burning re
Authors
Adam Pellegrini, Kendra K McLauchlan, Sarah E Hobbie, Michelle C. Mack, Abbey L Marcotte, David M. Nelson, Steven Perakis, Peter B. Reich, Kyle Whittinghill

Co-occurence of Chiricahua leopard frogs (Lithobates chiricahuensis) with sunfish (Lepomis)

Invasive species are a major threat to the persistence of native species, particularly in systems where ephemeral aquatic habitats have been replaced by permanent water and predators, such as fish, have been introduced. Within the Altar Valley, Arizona, the invasive American bullfrog, Lithobates catesbeianus (formerly Rana catesbeianus), has been successfully eradicated to help recover Chiricahua
Authors
Paige E. Howell, Brent H. Sigafus, Blake R. Hossack, Erin L. Muths

Challenges for leveraging citizen science to support statistically robust monitoring programs

Large samples and long time series are often needed for effective broad-scale monitoring of status and trends in wild populations. Obtaining those sample sizes can be more feasible when volunteers contribute to the dataset, but volunteer-selected sites are not always representative of a population. Previous work to account for biased site selection has relied on knowledge of covariates to explain
Authors
Emily L. Weiser, James E. Diffendorfer, Laura Lopez-Hoffman, Darius J. Semmens, Wayne E. Thogmartin

Components and predictors of biological soil crusts vary at the regional vs. plant community scales

Although biological soil crusts (biocrusts) occur globally in arid and semi-arid environments, most of our knowledge of biocrust cover and ecology is from a relatively small number of locations worldwide. Some plant communities are known to have high cover of biocrusts, but the abundance of biocrusts is largely undocumented in most plant communities. Using a data driven approach, we identified 16
Authors
Lea A. Condon, David A. Pyke