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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41764

Why are larger fish farther upstream? Testing multiple hypotheses using Silver Chub in two Midwestern United States riverscapes

ObjectiveThree competing hypotheses might explain the widely documented intrapopulation larger-fish-upstream phenomenon. The age-phased recruitment hypothesis posits that fish spawn downstream and move upstream as they age and grow, the static population with growth and mortality gradients hypothesis posits that fish spawn throughout a riverscape and growth is greater upstream while recruitment is
Authors
Joshuah S. Perkin, Patrick M. Kočovský, Zachary D Steffensmeier, Keith B. Gido

A spatially explicit modeling framework to guide management of subsidized avian predator densities

Anthropogenic resource subsidization across western ecosystems has contributed to widespread increases in generalist avian predators, including common ravens (Corvus corax; hereafter, raven). Ravens are adept nest predators and can negatively impact species of conservation concern. Predation effects from ravens are especially concerning for greater sage-grouse (Centrocercus urophasianus; hereafter
Authors
Shawn T. O'Neil, Peter S. Coates, Sarah C. Webster, Brianne E. Brussee, Seth J. Dettenmaier, John C. Tull, Pat J. Jackson, Michael L. Casazza, Shawn P. Espinosa

Spatial and temporal overlap between hatchery- and natural-origin steelhead and Chinook salmon during spawning in the Klickitat River, Washington, USA

A goal of many segregated salmonid hatchery programs is to minimize potential interbreeding between hatchery- and natural-origin fish. To assess this on the Klickitat River, Washington, USA, we used radiotelemetry during 2009–2014 to evaluate spatiotemporal spawning overlap between hatchery-origin and natural-origin steelhead Oncorhynchus mykiss and spring Chinook Salmon O. tshawytscha. We estimat
Authors
Joseph S. Zendt, Brady Allen, Tobias Kock, Russell Perry, Adam Pope

A brave new world: Managing for biodiversity conservation under ecosystem transformation

Traditional conservation practices have primarily relied on maintaining biodiversity by preserving species and habitats in place. Many regions are experiencing unprecedented environmental conditions, shifts in species distribution and habitats, and high turnover in species composition, resulting in ecological transformation. Natural resource managers have lacked tools for identifying and selecting
Authors
Jennifer L. Wilkening, Dawn Robin Magness, Laura Thompson, Abigail Lynch

Assessment of recovery potential for the American horseshoe crab (Limulus polyphemus): An application of the IUCN green status process

According to an International Union for Conservation of Nature (IUCN) Red List assessment (RLA), the American horseshoe crab (Limulus polyphemus), an iconic coastal species, is at risk of extirpation in some regions within its range where small and vulnerable populations occur. However, the RLA does not consider future status beyond viability and does not attempt to identify the conservation neces
Authors
David R. Smith, H. Jane Brockmann, Ruth H. Carmichael, Eric M. Hallerman, W.M. Watson, Jaime Zaldivar-Rae

Boreal conifers maintain carbon uptake with warming despite failure to track optimal temperatures

Warming shifts the thermal optimum of net photosynthesis (ToptA) to higher temperatures. However, our knowledge of this shift is mainly derived from seedlings grown in greenhouses under ambient atmospheric carbon dioxide (CO2) conditions. It is unclear whether shifts in ToptA of field-grown trees will keep pace with the temperatures predicted for the 21st century under elevated atmospheric CO2 con
Authors
Mirindi E. Dusenge, Jeffery M. Warren, Peter B. Reich, Eric Ward, Bridget K. Murphy, Artur Stefanski, Raimundo Bermudez, Marisol Cruz, David A. McLennan, Anthony W. King, Rebecca A. Montgomery, Paul J. Hanson, Danielle A. Way

Development and application of a qPCR-based genotyping assay for Ophidiomyces ophidiicola to investigate the epidemiology of ophidiomycosis

Ophidiomycosis (snake fungal disease) is an infectious disease caused by the fungus Ophidiomyces ophidiicola to which all snake species appear to be susceptible. Significant variation has been observed in clinical presentation, progression of disease, and response to treatment, which may be due to genetic variation in the causative agent. Recent phylogenetic analysis based on whole-genome sequenci
Authors
Ellen Haynes, Jeffrey M. Lorch, Matthew C. Allender

Low-complexity floodplain inundation model performs well for ecological and management applications in a large river ecosystem

Flooding is a dominant physical process that drives the form and function of river-floodplain ecosystems. Efficiently characterizing flooding dynamics can be challenging, especially over geographically broad areas or at spatial and temporal scales relevant for ecosystem management activities. Here, we empirically evaluated a low-complexity geospatial model of floodplain inundation in six study seg
Authors
Molly Van Appledorn, Nathan R. De Jager, Jason J. Rohweder

Biophysical factors control invasive annual grass hot spots in the Mojave Desert

Invasive annual grasses can promote ecosystem state changes and habitat loss in the American Southwest. Non-native annual grasses such as Bromus spp. and Schismus spp. have invaded the Mojave Desert and degraded habitat through increased fire occurrence, severity, and shifting plant community composition. Thus, it is important to identify and characterize the areas where persistent invasion has oc
Authors
Tanner Corless Smith, Tara B.B. Bishop, Michael C. Duniway, Miguel L. Villarreal, Anna C Knight, Seth M. Munson, Eric K. Waller, Ryan Jensen, Richard A. Gill

H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: Introductions into the United States and reassortments, December 2021–April 2022

Highly pathogenic avian influenza viruses (HPAIVs) of the A/goose/Guangdong/1/1996 lineage H5 clade 2.3.4.4b continue to have a devastating effect on domestic and wild birds. Full genome sequence analyses using 1369 H5N1 HPAIVs detected in the United States (U.S.) in wild birds, commercial poultry, and backyard flocks from December 2021 to April 2022, showed three phylogenetically distinct H5N1 vi
Authors
Sungsu Youk, Mia Kim Torchetti, Kristina Lantz, Julianna B. Lenoch, Mary Lea Killian, Christina Leyson, Sarah N. Bevins, Krista Dilione, Hon S. Ip, David E. Stallknecht, Rebecca L. Poulson, David L. Suarez, David E. Swayne, Mary J. Pantin-Jackwood

Evidence of population-level impacts and resiliency for Gulf of Mexico shelf taxa following the Deepwater Horizon oil spill

The goal of this paper was to review the evidence of population-level impacts of the Deepwater Horizon Oil Spill (DWH) on Gulf of Mexico (GOM) continental shelf taxa, as well as evidence of resiliency following the DWH. There is considerable environmental and biological evidence that GOM shelf taxa were exposed to and suffered direct and indirect impacts of the DWH. Numerous assessments, from meso
Authors
W.F. Patterson III, K.L. Robinson, B.K. Barnett, M. Campbell, D.C. Chagaris, J. P. Chanton, K. Daly, D. Hanisko, F. Hernandez, S.A. Murawski, A.G. Pollock, D. Portnoy, Erin L. Pulster

Tool 4: Suggested communication deliverables for coproduced projects

An informational tool provided as part of a toolkit for researchers and practitioners with an interest in coproducing actionable science to support public land management
Authors
Lea B. Selby, Sarah K. Carter, Travis Haby, D. J. A. Wood, Aparna Bamzai-Dodson, Patrick J. Anderson, Jeffrey E. Herrick, Ella M. Samuel, John C. Tull