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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41764

Migration timing and tributary use of spawning flannelmouth sucker (Catostomus latipinnis)

Spawning phenology and associated migrations of fishes are often regulated by factors such as temperature and stream discharge, but flow regulation of mainstem rivers coupled with climate change might disrupt these cues and affect fitness. Flannelmouth sucker (Catostomus latipinnis) persisting in heavily modified river networks are known to spawn in tributaries that might provide better spawning h
Authors
Sophia M. Bonjour, Keith B. Gido, Mark C. McKinstry, Charles N. Cathcart, Matthew R. Bogaard, Maria C. Dzul, Brian Daniel Healy, Zachary E. Hooley-Underwood, David L. Rogowski, Charles Yackulic

Movement and behavioral states of common carp (Cyprinus carpio) in response to a behavioral deterrent in a navigational lock

Freshwater ecosystems are some of the most affected by biological invasions due, in part, to the introduction of invasive carp worldwide. Where carp have become established, management programs often seek to limit further range expansion into new areas by reducing their movement through interconnected rivers and waterways. Lock and dams are important locations for non-physical deterrents, such as
Authors
Maggie Jo Raboin, John Plumb, Matthew Sholtis, David Smith, P. Ryan Jackson, Jose Rivera, Cory D. Suski, Aaron R. Cupp

Soil salinity and water level interact to generate tipping points in low salinity tidal wetlands responding to climate change

Low salinity tidal wetlands (LSTW) are vulnerable to sea level rise and saltwater intrusion, thus their carbon sequestration capacity is threatened. However, the thresholds of rapid changes in carbon dynamics and biogeochemical processes in LSTW due to changes in hydroperiod and salinity regime remain unclear. In this study, we examined the effects of soil porewater salinity and water level on cha
Authors
Hongqing Wang, Ken Krauss, Gregory Noe, Zhaohua Dai, Carl C. Trettin

Climate vulnerability for a desert fish: Integrating hydrologic exposures, adaptive capacity, and growth potential

Climate vulnerability can be evaluated by multiple organismal responses. We developed a climate vulnerability framework focused on growth potential of redband trout (Oncorhynchus mykiss newberri). We employed a bioenergetics model to evaluate spatial variability in growth potential in relation to constraints on body size imposed by stream flow, physiological responses linked to variable thermal re
Authors
Joseph R. Benjamin, Jason B. Dunham, Kara Anlauf-Dunn, Erika J. Eliason

A genome assembly for the southern Pacific rattlesnake, Crotalus oreganus helleri, in the western rattlesnake species complex

Rattlesnakes play important roles in their ecosystems by regulating prey populations, are involved in complex coevolutionary dynamics with their prey, and exhibit a variety of unusual adaptations, including maternal care, heat-sensing pit organs, hinged fangs, and medically-significant venoms. The western rattlesnake (Crotalus oreganus) is one of the widest ranging rattlesnake species, with a dist
Authors
Erin P. Westeen, Merly Escalona, Matthew Holding, Eric Beraut, Colin Fairbairn, Mohan P. A. Marimuthu, Oanh Nguyen, Ralph Perri, Robert N. Fisher, Erin Toffelmier, H. Bradley Shaffer, Ian J. Wang

Genetic erosion in an endangered desert fish during a multidecadal megadrought despite long-term supportive breeding

Human water use combined with a recent megadrought have reduced river and stream flow through the Southwestern United States and led to periodic drying of formerly perennial river segments. Reductions in snowmelt runoff and increased extent of drying collectively threaten short-lived, obligate aquatic species, including the endangered Rio Grande silvery minnow. This species experiences ‘boom-and-b
Authors
Megan J. Osborne, Thomas P. Archdeacon, Charles Yackulic, Robert K. Dudley, Guilherme Caeiro-Dias, Thomas F. Turner

A test of the green wave hypothesis in omnivorous brown bears across North America

Herbivorous animals tend to seek out plants at intermediate phenological states to improve energy intake while minimizing consumption of fibrous material. In some ecosystems, the timing of green-up is heterogeneous and propagates across space in a wave-like pattern, known as the green wave. Tracking the green wave allows individuals to prolong access to higher-quality forage. While there is a plet
Authors
Nathaniel R. Bowersock, L. M. Ciarniello, William W. Deacy, D. C. Heard, Kyle Joly, Clayton T. Lamb, William B. Leacock, Bruce Mclellan, Garth Mowat, Mathew S Sorum, Frank T. van Manen, Jerod A. Merkle

The relation between decadal droughts and eruptions of Steamboat Geyser in Yellowstone National Park, USA

In the past century, most eruptions of Steamboat Geyser in Yellowstone National Park's Norris Geyser Basin were mainly clustered in three episodes: 1961–1969, 1982–1984, and ongoing since 2018. These eruptive episodes resulted in extensive disturbance to surrounding trees. To characterize tree response over time as an indicator of geyser activity adjustments to climate variability, aerial and grou
Authors
Shaul Hurwitz, John C. King, Gregory T. Pederson, Mara H. Reed, Lauren N Harrison, Jefferson Hungerford, R. Greg Vaughan, Michael Manga

Ecosystem resilience to invasion and drought: Insights after 24 years in a rare never-grazed grassland

Understanding the resilience of ecosystems globally is hampered by the complex and interacting drivers of change characteristic of the Anthropocene. This is true for drylands of the western US, where widespread alteration of disturbance regimes and spread of invasive non-native species occurred with westward expansion during the 1800s, including the introduction of domestic livestock and spread of
Authors
Michael C. Duniway, Rebecca A Finger-Higgens, Erika L. Geiger, David L. Hoover, Alix Pfennigwerth, Anna C Knight, M. Van Scoyoc, Mark E. Miller, Jayne Belnap

Spatio-temporal variability in the strength, directionality, and relative importance of climate on occupancy and population densities in a philopatric mammal, the American pika (Ochotona princeps)

Species distribution models (SDMs) have been widely employed to evaluate species–environment relationships. However, when extrapolated over broad spatial scales or through time, these models decline in their predictive ability due to variation in how species respond to their environment. Many models assume species–environment relationships remain constant over space and time, hindering their abili
Authors
Peter D. Billman, Erik A. Beever, Marie L. Westover, Dylan K. Ryals

Fishes of Harney Basin revisited: An assessment of the distribution of native and nonnative fishes over a half century

The Harney Basin is Oregon's largest internally draining basin and contains a unique native fish assemblage. The first and only comprehensive study of the origin and distribution of Harney Basin fishes occurred in 1971. Here, we update this study and identify potential threats to the basin's native fishes a half century later. Our assessment documents that all species of native fishes are still pr
Authors
Matthew Laramie, Jason B. Dunham, Francine H. Mejia, Emily Dawn Heaston, Peter A Bisson

Decomposition rates of suppression-produced fish carcasses in a large, deep, high-elevation lake in North America

The decomposition of vertebrates in lake ecosystems has been largely understudied despite being a vital part of ecosystem processes. Invasive lake trout (Salvelinus namaycush) invaded Yellowstone Lake and caused a decline in the native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) population. To restore Yellowstone cutthroat trout, lake trout were suppressed by gillnetting annually s
Authors
Hayley Corrine Glassic, Christopher S. Guy, Lusha M. Tronstad, Michelle A. Briggs, Lindsey K. Albertson, Dominique R. Lujan, Todd M. Koel