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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41764

Submersed macrophyte density regulates aquatic greenhouse gas emissions

Shallow freshwater ecosystems emit large amounts of greenhouse gases (GHGs), such as carbon dioxide (CO2) and methane (CH4), yet emissions are highly variable. The role that aquatic macrophytes play in regulating aquatic GHG emissions is uncertain despite their ability to dominate shallow waterbodies. Here, we studied the effects of submersed macrophyte (Ceratophyllum demersum) density on CO2 and
Authors
Meredith E. Theus, Nicholas E. Ray, Sheel Bansal, Meredith A. Holgerson

Movement behavior, habitat selection, and functional responses to habitat availability among four species of wintering waterfowl in California

Habitat selection analyses provide a window into the perceived value of habitats by animals and how those perceptions compare with other animals, change across time, or change in relation to availability (termed functional responses). Habitat selection analysis and functional responses can be used to develop strategies to avoid habitat limitations, guide habitat management, and set attainable cons
Authors
Cory T. Overton, Michael L. Casazza

Annual and inter-annual variability in the diffuse attenuation coefficient and turbidity in an urbanized Washington lake from 2013 to 2022 assessed using Landsat-8/9

Water clarity, defined in this study using measurements of the downwelling diffuse light attenuation coefficient (Kd) and turbidity, is an important indicator of lake trophic status and ecosystem health. We used in-situ measurements to evaluate existing semi-analytical models for Kd and turbidity, developed a regional turbidity model based on spectral shape, and evaluated the spatial and temporal
Authors
Jennifer A. Schulien, Tessa Julianne Code, Curtis L. DeGasperi, David Beauchamp, Arielle Tonus Ellis, Arni H. Litt

Impacts of acute and chronic suspended solids exposure on juvenile freshwater mussels

Construction activities may affect adjacent water systems by introducing increased levels of suspended solids into the water body and may subsequently affect the survival and growth of freshwater mussels. We tested three sediment types from sites in Missouri, including Spring River sediment (SRS), Osage River bank clay soil (ORC), and quarried limestone from Columbia (LMT). We prepared series of s
Authors
Wenyu Zhu, James L. Kunz, Eric Brunson, Christopher M. Barnhart, Henry Brown, Stephen E. McMurray, Andy Roberts, Christopher Shulse, Kathleen Trauth, Binbin Wang, Jeffery A. Steevens, Baolin Deng

Ammonia and aquatic ecosystems – A review of global sources, biogeochemical cycling, and effects on fish

The purpose of this review is to better understand the full life cycle and influence of ammonia from an aquatic biology perspective. While ammonia has toxic properties in water and air, it also plays a central role in the biogeochemical nitrogen (N) cycle and regulates mechanisms of normal and abnormal fish physiology. Additionally, as the second most synthesized chemical on Earth, ammonia contrib
Authors
Thea Margaret Edwards, Holly J. Puglis, Jonathan Lopez Duran, Lillian Bradshaw, Douglas B. Kent, Aida Farag

Climate-induced shifts in grassland bird nesting phenology have implications for grassland management

Grasslands are among the most impacted ecosystems globally. In the midcontinent of North America, a > 80% loss of grasslands has made their conservation a major priority for resource managers. Grassland ecosystems evolved under periodic disturbances; consequently, grassland management often involves regular actions such as grazing, haying, or burning to maintain ecosystem integrity. The timing of
Authors
Michael J. Anteau, Kristen S. Ellis, Garrett J. MacDonald, Lawrence Igl, Neal D. Niemuth, Josh Vest

Conservation genomics of an endangered montane amphibian reveals low population structure, low genomic diversity and selection pressure from disease

Wildlife diseases are a major global threat to biodiversity. Boreal toads (Anaxyrus [Bufo] boreas) are a state-endangered species in the southern Rocky Mountains of Colorado and New Mexico, and a species of concern in Wyoming, largely due to lethal skin infections caused by the amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd). We performed conservation and landscape genomic analyses us
Authors
Daryl Trumbo, Bennett Hardy, Harry Crockett, Erin L. Muths, Brenna R. Forester, Rebecca Cheek, Shawna J Zimmerman, Sarah Corey-Rivas, Larissa L. Bailey, Chris Funk

Seasonal and elevational differences by sex in capture rate of ʻōpeʻapeʻa (Lasiurus semotus) on Hawai‘i Island

The study of nocturnally active bats is difficult even for those species that seasonally congregate. This challenge is particularly acute for ‘ōpe‘ape‘a (Hawaiian hoary bat; Lasiurus semotus) because of its solitary foliage-roosting behavior. Yet surveys are essential for conservation and management of this endangered species and only land mammal endemic to the Hawaiian Islands. We surveyed for ‘ō
Authors
Julia P. S. Hoeh, Aaron A. Aguirre, Flor A. Calderon, Sean P. Casler, Sarah G. Ciarrachi, Karen Courtot, Kristina Montoya-Aiona, Corinna A. Pinzari, P. Marcos Gorresen

Bayesian weighting of climate models based on climate sensitivity

Using climate model ensembles containing members that exhibit very high climate sensitivities to increasing CO2 concentrations can result in biased projections. Various methods have been proposed to ameliorate this ‘hot model’ problem, such as model emulators or model culling. Here, we utilize Bayesian Model Averaging as a framework to address this problem without resorting to outright rejection o
Authors
Elias Massoud, Huikyo Lee, Adam Terando, Michael Wehner

Comparing methods to estimate feral burro abundance

Obtaining precise and unbiased estimates of feral burro (Equus asinus) abundance in the western United States is challenging due to their cryptic pelage and the rugged terrain they inhabit. Management agencies employ helicopter-based, simultaneous double-observer sightability surveys (hereafter denoted as DOS) to estimate abundance of burros; but the DOS method routinely produces negatively biased
Authors
Jacob D. Hennig, Kathryn A. Schoenecker

Alternative measures of trait–niche relationships: A test on dispersal traits in saproxylic beetles

Functional trait approaches are common in ecology, but a lack of clear hypotheses on how traits relate to environmental gradients (i.e., trait–niche relationships) often makes uncovering mechanisms difficult. Furthermore, measures of community functional structure differ in their implications, yet inferences are seldom compared among metrics. Community-weighted mean trait values (CWMs), a common m
Authors
Ryan C. Burner, Jörg G. Stephan, Lukas Drag, Mária Potterf, Tone Birkemoe, Juha Siitonen, Jörg Müller, Otso Ovaskainen, Anne Sverdrup-Thygeson, Tord Snäll