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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 171398

Immunotoxic response of bio-based plastic on early life stage zebrafish (Danio rerio): A safe alternative to petroleum-based plastics?

Bio-based plastics are marketed as environmentally friendly alternatives to petroleum-based plastics, although they require specific composting conditions for degradation, which leads to their accumulation in the environment and potential risks to aquatic organisms. We hypothesized that the accumulation of bio-based plastics may induce immunotoxic responses in fish. Our research focused on the acc
Authors
Haodong Cheng, Yao Zou, Bin Lu, Jiazhen Wang, Rongrong Xuan, Jason Tyler Magnuson, Chunmiao Zheng, Wenhui Qiu

qPCR-based phytoplankton abundance and chlorophyll a: A multi-year study in twelve large freshwater rivers across the United States

Phytoplankton overgrowth, which characterizes the eutrophication or trophic status of surface water bodies, threatens ecosystems and public health. Quantitative polymerase chain reaction (qPCR) is promising for assessing the abundance and community composition of phytoplankton. However, applications of qPCR to indicate eutrophication and trophic status, especially in lotic systems, have yet to be
Authors
Chiqian Zhang, Kyle D. McIntosh, N. Sienkiewicz, Erin A. Stelzer, Jennifer L. Graham, Jingrang Lu

Evaluating a process-guided deep learning approach for predicting dissolved oxygen in streams

Dissolved oxygen (DO) is a critical water quality constituent that governs habitat suitability for aquatic biota, biogeochemical reactions and solubility of metals in streams. Recently introduced high-frequency sensors have increased our ability to measure DO, but we still lack the capacity to understand and predict DO concentrations at high spatial resolutions or in unmonitored locations. Machine
Authors
Jeffrey M Sadler, Lauren Elizabeth Koenig, Galen Agnew Gorski, Alice M. Carter, Robert O. Hall

Geomorphic change, hydrology, and hydraulics of Caulks Creek, Wildwood, Missouri

Caulks Creek is a small stream that flows through the city of Wildwood in western St. Louis County, Missouri. The U.S. Geological Survey, in cooperation with the city of Wildwood, has documented historical and recent geomorphic change along Caulks Creek, simulated the hydrologic and hydraulic response of Caulks Creek to a variety of design storm scenarios, and simulated bank retreat resulting from
Authors
Jessica Z. LeRoy, David C. Heimann, Kyle D. Hix, Charles V. Cigrand, Tyler J. Burk

Survey effort and targeted landbird community metrics at Indiana lowland forest restoration sites

Many sampling and analytical methods can estimate the abundance, distributions, and diversity of birds and other wildlife. However, challenges with sample size and analytical capacity can make these methods difficult to implement for resource-limited monitoring programs. To apprise efficient and attainable sampling designs for landbird monitoring programs with limited observational data, we used b
Authors
Benjamin M West, Mark L. Wildhaber, Nicholas S. Green, John P. Isanhart, M. Victoria McDonald, Michael J. Hooper

Large eddy simulation of cross-shore hydrodynamics under random waves in the inner surf and swash zones

A 3D large eddy simulation coupled with a free surface tracking scheme was used to simulate cross-shore hydrodynamics as observed in a large wave flume experiment. The primary objective was to enhance the understanding of wave-backwash interactions and the implications for observed morphodynamics. Two simulation cases were carried out to elucidate key processes of wave-backwash interactions across
Authors
Benjamin Tsai, Tian-Jian Hsu, Seok-Bong Lee, Maria Pontiki, Jack A. Puleo, Meagan E. Wengrove

Ambient flow and transport in long-screened, sand-packed wells: Insights into cross contamination and wellbore flow

The presence of long-screened wells with a surrounding sand pack can have a major effect on the redistribution of contaminants in groundwater, particularly when the wells are set in low-hydraulic conductivity aquifers. Such redistribution, or cross contamination, can occur through vertical flow and advective transport or by in-well mixing via multiple non-advective transport processes. A multi-met
Authors
Philip Harte, Christopher Palumbo Ely, Nicholas F. Teague, Nicole C. Fenton, Anthony A. Brown

Climate, hydrology, and nutrients control the seasonality of Si concentrations in rivers

The seasonal behavior of fluvial dissolved silica (DSi) concentrations, termed DSi regime, mediates the timing of DSi delivery to downstream waters and thus governs river biogeochemical function and aquatic community condition. Previous work identified five distinct DSi regimes across rivers spanning the Northern Hemisphere, with many rivers exhibiting multiple DSi regimes over time. Several poten
Authors
Keira Johnson, Kathi Jo Jankowski, Joanna C. Carey, Lienne R. Sethna, Sidney A. Bush, Diane M. McKnight, William H. McDowell, Adam S. Wymore, Pirkko Kortelainen, Jeremy B. Jones, Nicholas Lyon, Hjalmar Laudon, Amanda Poste, Pamela L. Sullivan

Debris-flow monitoring on volcanoes via a novel usage of a laser rangefinder

Mount Rainier has had at least 11 large lahars over the last 6,000 years, including one occurring without evidence of eruptive activity. This prompted the creation of a lahar detection system that uses a combination of seismic, infrasound, and tripwires. We test a laser rangefinder placed on a river channel bank for detecting and confirming mass movements flowing past a station as an alternative t
Authors
Alexandra M. Iezzi, Emily H Bryant, Weston Thelen, Craig Gabrielson, Seth C. Moran, Matthew R. Patrick, Edward F. Younger, Maciej Obryk

Genomic characterization of highly pathogenic H5 avian influenza viruses from Alaska during 2022 provides evidence for genotype-specific trends of spatiotemporal and interspecies dissemination

The ongoing panzootic of highly pathogenic H5 clade 2.3.4.4b avian influenza (HPAI) spread to North America in late 2021, with detections of HPAI viruses in Alaska beginning in April 2022. HPAI viruses have since spread across the state, affecting many species of wild birds as well as domestic poultry and wild mammals. To better understand the dissemination of HPAI viruses spatiotemporally and amo
Authors
Christina Ahlstrom, Mia Kim Torchetti, Julianna B. Lenoch, Kimberlee Beckmen, Megan Boldenow, Evan J Buck, Bryan Daniels, Krista Dilione, Robert Gerlach, Kristina Lantz, Angela Matz, Rebecca L. Poulson, Laura Celeste Scott, Gay Sheffield, David R. Sinnett, David E. Stallknecht, Raphaela Stimmelmayr, Eric B. Taylor, Alison R. Williams, Andrew M. Ramey

Nitrogen fixation and fertilization have similar effects on biomass allocation in nitrogen-fixing plants

Plants adjust their allocation to different organs based on nutrient supply. In some plant species, symbioses with nitrogen-fixing bacteria that live in root nodules provide an alternate pathway for nitrogen acquisition. Does access to nitrogen-fixing bacteria modify plants' biomass allocation? We hypothesized that access to nitrogen-fixing bacteria would have the same effect on allocation to abov
Authors
DNL Menge, A. P. Wolfe, J. Funk, Steven Perakis, K.A. Carreras Pereira

Climate controls on longshore sediment transport and coastal morphology adjacent to engineered inlets

Coastal jetties are commonly used throughout the world to stabilize channels and improve navigation through inlets. These engineered structures form artificial boundaries to littoral cells by reducing wave-driven longshore sediment transport across inlet entrances. Consequently, beaches adjacent to engineered inlets are subject to large gradients in longshore transport rates and are highly sensiti
Authors
Andrew W. Stevens, Peter R Ruggiero, Kai Alexander Parker, Sean Vitousek, Guy Gelfenbaum, George M Kaminsky
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