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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41753

READI-Net—Providing tools for the early detection and management of aquatic invasive species

OverviewEarly detection of biological threats, such as invasive species, increases the likelihood that control efforts will be successful and cost-effective. Environmental deoxyribonucleic acid (eDNA) sampling is an established method for the efficient and sensitive early detection of new biological threats. The Rapid eDNA Assessment and Deployment Initiative & Network (READI-Net) is a project des
Authors
Lisa McKeon, Todd Wojtowicz

U.S. Geological Survey Northern Rocky Mountain Science Center science highlights for fiscal year 2023

The U.S. Geological Survey (USGS) Northern Rocky Mountain Science Center is based in Bozeman, Montana, and has field offices in Glacier National Park, Mont.; Missoula, Mont.; and Knoxville, Tennessee. Our scientists respond to the natural resource management needs of Federal, Tribal, and State partners—directly engaging in the coproduction and application of integrated, interdisciplinary science—a
Authors
Todd Wojtowicz

Interdisciplinary science approach for harmful algal blooms (HABs) and algal toxins—A strategic science vision for the U.S. Geological Survey

Executive SummaryAlgal blooms in water, soils, dusts, and the environment have captured national attention because of concerns associated with exposure to algal toxins for humans and animals. Algal blooms naturally occur in all surface-water types and are important primary producers for aquatic ecosystems. However, excessive algae growth can be associated with many harmful effects ranging from aes
Authors
Victoria G. Christensen, Christopher J. Crawford, Robert J. Dusek, Michael J. Focazio, Lisa Reynolds Fogarty, Jennifer L. Graham, Celeste A. Journey, Mari E. Lee, James H. Larson, Sarah M. Stackpoole, Viviana Mazzei, Emily J. Pindilli, Barnett A. Rattner, E. Terrence Slonecker, Kristen B. McSwain, Timothy J. Reilly, Ashley E. Lopez

Capturing potential: Leveraging grass carp behavior Ctenopharyngodon idella for enhanced removal

Effective management of invasive species benefits from a comprehensive understanding of the species’ behavior and interactions with the invaded system. We investigated temporal dynamics of telemetry detections and the potential utility of a traitor approach for informing response efforts to the invasive grass carp (Ctenopharyngodon idella) population in the Sandusky River, a major tributary to Lak
Authors
Matthew Ross Acre, Tyler Michael Hessler, Sophia Marie Bonjour, James Roberts, Scott F. Colborne, Travis O. Brenden, Lucas R. Nathan, Dustin Broaddus, Christopher S. Vandergoot, Christine M. Mayer, Song S. Qian, Robert D. Hunter, Ryan E. Brown, Robin Calfee

Browsing the literature

For this edition of Browsing the Literature, we have two new papers from Rangeland Ecology & Management, a series of basic ecology papers with an international scope from journals such as the Proceedings of the National Academy of Sciences (USA), Science, and Nature, and several papers advancing our understanding of drought and carbon at global scales. Additionally, several papers on sagebrush-st
Authors
Matthew Germino

Genome-wide association analysis of the resistance to infectious hematopoietic necrosis virus in two rainbow trout aquaculture lines confirms oligogenic architecture with several moderate effect quantitative trait loci

Infectious hematopoietic necrosis (IHN) is a disease of salmonid fish that is caused by the IHN virus (IHNV), which can cause substantial mortality and economic losses in rainbow trout aquaculture and fisheries enhancement hatchery programs. In a previous study on a commercial rainbow trout breeding line that has undergone selection, we found that genetic resistance to IHNV is controlled by the ol
Authors
Yniv Palti, Roger L. Vallejo, Maureen K. Purcell, Guangtu Gao, Kristy L. Shewbridge, Roseanna L. Long, Christopher Setzke, Breno O. Fragomeni, Hao Cheng, Kyle E. Martin, Kerrry A. Naish

Biodiversity loss reduces global terrestrial carbon storage

Natural ecosystems store large amounts of carbon globally, as organisms absorb carbon from the atmosphere to build large, long-lasting, or slow-decaying structures such as tree bark or root systems. An ecosystem’s carbon sequestration potential is tightly linked to its biological diversity. Yet when considering future projections, many carbon sequestration models fail to account for the role biodi
Authors
Sarah R. Weiskopf, Forest Isbell, Maria Isabel Arce-Plata, Moreno Di Marco, Mike Harfoot, Justin A. Johnson, Susannah B. Lerman, Brian W. Miller, Toni Lyn Morelli, Akira S. Mori, Ensheng Weng, Simon Ferrier

Discovery and genomic characterization of a novel hepadnavirus from asymptomatic anadromous alewife (Alosa pseudoharengus)

The alewife (Alosa pseudoharengus) is an anadromous herring that inhabits waters of northeastern North America. This prey species is a critical forage for piscivorous birds, mammals, and fishes in estuarine and oceanic ecosystems. During a discovery project tailored to identify potentially emerging pathogens of this species, we obtained the full genome of a novel hepadnavirus (ApHBV) from clinical
Authors
Clayton D Raines, Jan Lovy, Nicolas B.D. Phelps, Sunil Mor, Terry Ng, Luke Iwanowicz

Chronic wasting disease alters the movement behavior and habitat use of mule deer during clinical stages of infection

Integrating host movement and pathogen data is a central issue in wildlife disease ecology that will allow for a better understanding of disease transmission. We examined how adult female mule deer (Odocoileus hemionus) responded behaviorally to infection with chronic wasting disease (CWD). We compared movement and habitat use of CWD-infected deer (n = 18) to those that succumbed to starvation (an
Authors
Gabriel M. Barrile, Paul Cross, Cheynne Stewart, Jennifer L. Malmberg, Rhiannon P. Jakopak, Justin Binfet, Kevin Montieth, Brandon Werner, Jessica Jennings-Gaines, JA Merkle

Resilience is not enough: Toward a more meaningful rangeland adaptation science

Rangeland ecosystems, and their managers, face the growing urgency of climate change impacts. Researchers are therefore seeking integrative social-ecological frameworks that can enhance adaptation by managers to these climate change dynamics through tighter linkages among multiple scientific disciplines and manager contexts. Social-ecological framings, including resilience and vulnerability, are p
Authors
Hailey Wilmer, Daniel B. Ferguson, Maude Dinan, Eric Thacker, Peter B. Adler, Kathryn Bills Walsh, John B. Bradford, Mark Brunson, Justin D. Derner, Emile Elias, Andrew J Felton, Curtis A. Gray, Christina Greene, Mitchel P McClaran, Robert K. Shriver, Mitch Stephenson, Katharine Nash Suding

Accuracy, accessibility, and institutional capacity shape the utility of habitat models for managing and conserving rare plants on western public lands

Public lands are often managed for multiple uses ranging from energy development to rare plant conservation. Habitat models can help land managers assess and mitigate potential effects of projects on rare plants, but it is unclear how models are currently being used. Our goal was to better understand how staff in the Bureau of Land Management currently use habitat models to inform their decisions,
Authors
Ella M. Samuel, Jennifer K. Meineke, Laine E. McCall, Lea B. Selby, Alison C. Foster, Zoe M. Davidson, Carol A. Dawson, Catherine S. Jarnevich, Sarah K. Carter

Geographic drivers of mercury entry into aquatic food webs revealed by mercury stable isotopes in dragonfly larvae

Atmospheric mercury (Hg) emissions and subsequent transport and deposition are major concerns within protected lands, including national parks, where Hg can bioaccumulate to levels detrimental to human and wildlife health. Despite this risk to biological resources, there is limited understanding of the relative importance of different Hg sources and delivery pathways within protected regions. Here
Authors
Sarah E. Janssen, Christopher James Kotalik, James Willacker, Michael T. Tate, Colleen M Flanagan-Pritz, Sarah Nelson, David P. Krabbenhoft, David Walters, Collin Eagles-Smith