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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41764

Models of underlying autotrophic biomass dynamics fit to daily river ecosystem productivity estimates improve understanding of ecosystem disturbance and resilience

Directly observing autotrophic biomass at ecologically relevant frequencies is difficult in many ecosystems, hampering our ability to predict productivity through time. Since disturbances can impart distinct reductions in river productivity through time by modifying underlying standing stocks of biomass, mechanistic models fit to productivity time series can infer underlying biomass dynamics. We i
Authors
Joanna R. Blaszczak, Charles Yackulic, Robert K. Shriver, Jr. Hall

Herbivorous grass carp (Ctenopharyngodon idella) exhibit greater olfactory response to amino acids than filter-feeding bighead (Hypophthalmichthysnobilis) and silver carp (Hypophthalmichthys molitrix)

Due to their invasiveness in North America, grass (Ctenopharyngodon idella), bighead (Hypophthalmichthys nobilis), and silver carp (Hypophthalmichthys molitrix) are management priorities. Comparing electrophysiological responses to olfactory cues, such as amino acids, could help identify stimuli to facilitate management efforts (i.e., repellants or baits). We assessed olfactory response magnitude
Authors
Mark L. Wildhaber, Benjamin M West, Karlie K Ditter, Alex S. Peterson, Robin Calfee, Zachary D Beaman

Least Bell’s Vireo (Vireo bellii pusillus) and Southwestern Willow Flycatcher (Empidonax traillii extimus) surveys in the Sepulveda Dam Basin, Los Angeles County, California—2022 data summary

Executive SummaryWe surveyed for Least Bell’s Vireos (Vireo bellii pusillus; vireo) and Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) along Bull Creek, Haskell Creek, and the Los Angeles River (Sepulveda Dam project area) in Los Angeles County, California, in 2022. Four vireo surveys were completed from April 26 to July 14, and three flycatcher surveys were completed fro
Authors
Ryan E. Pottinger, Barbara E. Kus

Ecological effects of pinyon-juniper removal in the Western United States—A synthesis of scientific research, January 2014–March 2021

Executive SummaryIncreasing density of pinyon (Pinus spp.) and juniper (Juniperus spp.) woodlands (hereinafter “pinyon-juniper”), as well as expansion of these woodlands into adjacent shrublands and grasslands, has altered ecosystem function and wildlife habitat across large areas of the interior western United States. Although there are many natural and human-caused drivers of woodland infilling
Authors
Douglas J. Shinneman, Susan K. McIlroy, Sharon A Poessel, Rosemary L. Downing, Tracey N. Johnson, Aaron C. Young, Todd E. Katzner

Dispersive currents explain patterns of population connectivity in an ecologically and economically important fish

How to identify the drivers of population connectivity remains a fundamental question in ecology and evolution. Answering this question can be challenging in aquatic environments where dynamic lake and ocean currents coupled with high levels of dispersal and gene flow can decrease the utility of modern population genetic tools. To address this challenge, we used RAD-Seq to genotype 959 yellow perc
Authors
Claire Schraidt, Amanda Susanne Ackiss, Wesley Alan Larson, Mark D Rowe, Tomas O Höök, Mark R. Christie

Linear and landscape disturbances alter Mojave desert tortoise movement behavior

Introduction: Animal movements are influenced by landscape features; disturbances to the landscape can alter movements, dispersal, and ultimately connectivity among populations. Faster or longer movements adjacent to a localized disturbance or within disturbed areas could indicate reduced habitat quality whereas slower or shorter movements and reduced movements may indicate greater availability of
Authors
Steven J. Hromada, Todd C. Esque, A. G. Vandergast, K. Kristina Drake, Felicia Chen, Benjamin O Gottsacker, Jordan Andrew Swart, Ken E Nussear

Putting down roots: Afforestation and bank cohesion of Icelandic Rivers

Riparian vegetation is widely recognized as a critical component of functioning fluvial systems. Human pressures on woody vegetation including riparian areas have had lasting effects, especially at high latitude. In Iceland, prior to human settlement, native downy birch woodlands covered approximately 15%–40% of the land area compared to 1%–2% today. Afforestation efforts include planting seedling
Authors
Sara L. Rathburn, Prostur Eysteinsson, Þorsteinn Sæmundsson, John T. Kemper, Celeste D. Wieting, Jonathan M. Friedman

Pollinator conservation and climate science at the U.S. Geological Survey

Introduction Ecosystems—whether agricultural, urban, or natural—depend on pollinators, great and small. Pollinators in the form of bees, birds, butterflies, bats, and even moths provide vital, but often invisible services, from contributing to biodiverse terrestrial wildlife and plant communities to supporting healthy watersheds. Pollinator declines worldwide have been noted as land-use and climat
Authors
Elise R. Irwin, Jonathan R. Mawdsley

A new DNA extraction method (HV-CTAB-PCI) for amplification of nuclear markers from open ocean-retrieved faeces of an herbivorous marine mammal, the dugong

Non-invasively collected faecal samples are an alternative source of DNA to tissue samples, that may be used in genetic studies of wildlife when direct sampling of animals is difficult. Although several faecal DNA extraction methods exist, their efficacy varies between species. Previous attempts to amplify mitochondrial DNA (mtDNA) markers from faeces of wild dugongs (Dugong dugon) have met with l
Authors
Vicky Ooi, Lee McMichael, Margaret Hunter, Aristide Takoukam Kamla, Janet M. Lanyon

Evaluating population trends of juvenile Atlantic Sturgeon at low abundance in a dynamic estuarine environment (Hudson River, New York)

Evaluating population trends in dynamic estuarine environments can be challenging, especially when survey data include a high percentage of zero observations. In fishery-independent surveys, zeros that come from reduced susceptibility to sample gears and reduced availability of the population to the survey impact survey catchability and negatively bias relative abundance indices. A zero-inflated n
Authors
Mark Richard Dufour, Song S. Qian

Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

Spiny lizards (genus Sceloporus) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis, is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from gra
Authors
Anusha P. Bishop, Erin P. Westeen, Michael L. Yuan, Merly Escalona, Eric Beraut, Colin Fairbairn, Mohan P. A. Marimuthu, Oanh Nguyen, Noravit Chumchim, Erin Toffelmier, Robert N. Fisher, H. Bradley Shaffer, Ian J. Wang

Antimycin A species sensitivity distribution: Perspectives for non-indigenous fish control

The global transfer of aquatic biota outside their native geographical range has resulted in dramatic changes to biological communities. Many nonnative species introductions are facilitated by human activity and then spread intra-continentally through connected watersheds once established. Resource managers therefore utilize multiple control technologies, such as management chemicals, for fisherie
Authors
Gavin Nicholas Saari